Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
LOC115185415Cleft lip and palate transmembrane protein 1-like protein. (542 aa)    
Predicted Functional Partners:
ENSSTUP00000073546
DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11.
    
 
 0.762
LOC115156035
D-3-phosphoglycerate dehydrogenase-like.
     
 0.748
LOC115160744
D-3-phosphoglycerate dehydrogenase-like.
     
 0.748
ldhd
Lactate dehydrogenase D.
     
  0.717
ENSSTUP00000035605
Alanine--glyoxylate aminotransferase 2.
     
  0.717
glyctk
Glycerate kinase.
     
  0.708
LOC115167042
Glucose-6-phosphate isomerase-like.
     
 0.701
LOC115197521
Glucose-6-phosphate isomerase-like.
     
 0.701
ENSSTUP00000066050
Glucose-6-phosphate isomerase b.
     
 0.701
LOC115154277
Phosphoglycerate kinase-like.
     
 0.700
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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