STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115170121Vascular cell adhesion protein 1-like. (689 aa)    
Predicted Functional Partners:
LOC115201542
Integrin alpha-9-like.
   
 0.919
LOC115152816
Integrin alpha-9-like.
   
 0.919
LOC115150589
Integrin beta-7-like.
   
 
 0.886
LOC115179184
Integrin alpha-4-like.
   
 0.886
LOC115161003
Integrin alpha-4-like.
   
 0.886
LOC115155660
Integrin alpha-4-like.
   
 0.886
LOC115195888
Integrin beta-1-like.
   
 
 0.884
ENSSTUP00000057815
Integrin, beta 1a.
   
 
 0.884
ITGB1
Integrin beta-1-like.
   
 
 0.884
ITGB1-2
Integrin subunit beta 1.
   
 
 0.884
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.