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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB24Ras-related protein Rab-24-like. (201 aa)    
Predicted Functional Partners:
LOC115148794
Rab5 GDP/GTP exchange factor-like.
   
 0.977
LOC115154263
Rab5 GDP/GTP exchange factor-like.
   
 0.977
LOC115163280
Rab5 GDP/GTP exchange factor-like.
   
 0.977
LOC115206219
Rab5 GDP/GTP exchange factor-like.
   
 0.977
LOC115200153
Rab5 GDP/GTP exchange factor-like.
   
 0.977
APPL2
DCC-interacting protein 13-beta-like.
    
 
 0.924
appl1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 
 0.924
LOC115196952
DCC-interacting protein 13-beta-like.
    
 
 0.924
LOC115151041
Homeobox protein ANF-1-like.
    
 
 0.924
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.887
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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