Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB24Ras-related protein Rab-24-like. (201 aa)    
Predicted Functional Partners:
LOC115148794
Rab5 GDP/GTP exchange factor-like.
   
 0.950
LOC115154263
Rab5 GDP/GTP exchange factor-like.
   
 0.950
LOC115163280
Rab5 GDP/GTP exchange factor-like.
   
 0.950
LOC115206219
Rab5 GDP/GTP exchange factor-like.
   
 0.950
LOC115200153
Rab5 GDP/GTP exchange factor-like.
   
 0.941
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.906
vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.903
LOC115196441
Vacuolar protein sorting-associated protein 16 homolog.
    
 0.862
ENSSTUP00000089819
Vacuolar protein sorting 16 homolog.
    
 0.862
LOC115154876
Rab proteins geranylgeranyltransferase component A 2-like.
    
 0.846
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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