Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000012386annotation not available (1200 aa)    
Predicted Functional Partners:
LOC115176658
Protein lin-28 homolog A-like.
    
 0.841
LOC115176844
Protein lin-28 homolog A-like.
    
 0.841
LOC115156681
DIS3-like exonuclease 2.
    
 
 0.816
polr2h
RNA polymerase II subunit H.
    
  0.812
ENSSTUP00000070694
Polymerase (RNA) II (DNA directed) polypeptide I.
    
  0.808
LOC115166705
DNA-directed RNA polymerase II subunit RPB7-like.
    
  0.778
LOC115205758
DNA-directed RNA polymerase II subunit RPB7.
    
  0.778
sympk
Symplekin.
   
 0.772
LOC115151785
DNA-directed RNA polymerases I, II, and III subunit RPABC1-like.
    
  0.766
LOC115157353
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.766
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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