Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115152953Forkhead box protein J1-B-like. (472 aa)    
Predicted Functional Partners:
LOC115192557
DNA-binding protein RFX2-like.
    
 
 0.817
LOC115158326
DNA-binding protein RFX2.
    
 
 0.817
LOC115149221
Transcription factor RFX3-like.
    
 
 0.801
LOC115159362
Transcription factor RFX3-like.
    
 
 0.801
ENSSTUP00000054649
Forkhead box N4.
   
    0.752
ENSSTUP00000060806
Forkhead box N4.
   
    0.752
ENSSTUP00000052541
Forkhead box N1.
   
    0.750
ENSSTUP00000106145
Forkhead box N1.
   
    0.750
tbc1d32
TBC1 domain family member 32.
    
 
 0.738
suox
Sulfite oxidase.
     
  0.732
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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