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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115170122Presenilins-associated rhomboid-like protein, mitochondrial. (403 aa)    
Predicted Functional Partners:
STOML2
Stomatin-like protein 2, mitochondrial.
  
 0.766
LOC115159476
Stomatin-like protein 2, mitochondrial.
  
 0.766
LOC115170134
ATP-dependent zinc metalloprotease YME1L1-like.
  
 
 0.714
LOC115195662
ATP-dependent zinc metalloprotease YME1L1-like.
  
 
 0.714
YME1L1
ATP-dependent zinc metalloprotease YME1L1-like.
  
 
 0.714
LOC115156604
ATP-dependent zinc metalloprotease YME1L1-like.
  
 
 0.714
ENSSTUP00000054010
annotation not available
  
 
 0.697
LOC115165629
Serine/threonine-protein kinase PINK1, mitochondrial-like.
    
 
 0.695
PHB2
Prohibitin-2-like.
  
 0.694
LOC115158804
Prohibitin-2-like.
  
 0.694
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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