Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115170122Presenilins-associated rhomboid-like protein, mitochondrial. (403 aa)    
Predicted Functional Partners:
LOC115165629
Serine/threonine-protein kinase PINK1, mitochondrial-like.
    
 
 0.874
STOML2
Stomatin-like protein 2, mitochondrial.
  
 0.797
LOC115159476
Stomatin-like protein 2, mitochondrial.
  
 0.797
LOC115170134
ATP-dependent zinc metalloprotease YME1L1-like.
  
 
 0.770
LOC115195662
ATP-dependent zinc metalloprotease YME1L1-like.
  
 
 0.770
YME1L1
ATP-dependent zinc metalloprotease YME1L1-like.
  
 
 0.770
LOC115156604
ATP-dependent zinc metalloprotease YME1L1-like.
  
 
 0.770
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 
 0.726
OPA1
Dynamin-like 120 kDa protein, mitochondrial.
   
 
 0.701
LOC115151541
Dynamin-like 120 kDa protein, mitochondrial.
   
 
 0.701
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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