Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115151655Membralin-like. (728 aa)    
Predicted Functional Partners:
LOC115156497
Transmembrane and ubiquitin-like domain-containing protein 1.
    
 
 0.908
LOC115203994
Transmembrane and ubiquitin-like domain-containing protein 2.
    
 
 0.852
LOC115171547
Transmembrane and ubiquitin-like domain-containing protein 1.
    
 
 0.852
LOC115176007
E3 ubiquitin-protein ligase RNF5-like.
    
 
 0.764
LOC115149196
E3 ubiquitin-protein ligase RNF185-like.
    
 
 0.764
RNF5
Ring finger protein 5.
    
 
 0.764
LOC115159408
E3 ubiquitin-protein ligase RNF185.
    
 
 0.764
smpdl3b
Sphingomyelin phosphodiesterase acid like 3B.
      
 0.705
ENSSTUP00000032897
Cache domain containing 1.
      
 0.686
ENSSTUP00000092658
Cache domain containing 1.
      
 0.686
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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