Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115166749Gamma-crystallin C-like. (208 aa)    
Predicted Functional Partners:
ENSSTUP00000031778
Coiled-coil domain containing 24.
      
 0.522
ccdc24
Coiled-coil domain containing 24.
      
 0.522
rax
Retina and anterior neural fold homeobox.
      
 0.474
ENSSTUP00000079980
Retinal homeobox gene 3.
      
 0.474
LOC115154977
Rho guanine nucleotide exchange factor 15-like.
      
 0.459
BFSP1
Filensin-like.
      
 0.457
ENSSTUP00000078897
annotation not available
      
 0.457
ENSSTUP00000048019
Wu:fc23c09.
      
 0.404
ENSSTUP00000086516
Wu:fc23c09.
      
 0.404
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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