Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115204496Zinc-binding protein A33-like. (470 aa)    
Predicted Functional Partners:
ddx58
DExD/H-box helicase 58.
    
  0.689
LOC115162250
ATP-dependent RNA helicase TDRD9-like.
    
 0.618
ro60
Ro60, Y RNA binding protein.
    
 0.548
LOC115180368
Ubiquitin-conjugating enzyme E2 H.
    
 
 0.527
ifih1
Interferon induced with helicase C domain 1.
   
 0.525
ENSSTUP00000004056
annotation not available
    
 
 0.513
UBE2H
Ubiquitin-conjugating enzyme E2 H-like.
    
 
 0.513
LOC115197943
Probable ATP-dependent RNA helicase DHX58.
    
  0.508
LOC115171111
Probable ATP-dependent RNA helicase DHX58.
    
  0.508
LOC115197369
Ubiquitin-conjugating enzyme E2 N.
    
 0.505
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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