Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000012457annotation not available (57 aa)    
Predicted Functional Partners:
SETX
Probable helicase senataxin.
   
 
 0.885
ENSSTUP00000088588
Exosome component 10.
   
 
 0.853
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 
 0.834
rnmt
RNA guanine-7 methyltransferase.
    
 
 0.766
ncbp2
Nuclear cap binding protein subunit 2.
   
 
 0.761
LOC115194772
5'-3' exoribonuclease 2-like.
   
 
 0.755
LOC115174957
5'-3' exoribonuclease 2-like.
   
 
 0.755
sympk
Symplekin.
   
 
 0.752
drosha
Drosha ribonuclease III.
    
 
 0.749
ENSSTUP00000026272
annotation not available
    
 
 0.749
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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