pomgnt1 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pomgnt1

Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-). (655 aa)

Predicted Functional Partners:

LOC115180439

0.974

ENSSTUP00000026703

0.974

pomt2

0.974

LOC115176675

0.974

LOC115169761

0.958

LOC115171563

0.958

LOC115205174

0.958

LOC115177496

0.958

LOC115177059

0.958

b4galt3

0.958

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSTUP00000026703	LOC115176675	ENSSTUP00000026703	ENSSTUP00000094312	protein-O-mannosyltransferase 1.	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2.	0.974
ENSSTUP00000026703	LOC115180439	ENSSTUP00000026703	ENSSTUP00000023739	protein-O-mannosyltransferase 1.	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like.	0.974
ENSSTUP00000026703	pomgnt1	ENSSTUP00000026703	ENSSTUP00000012477	protein-O-mannosyltransferase 1.	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).	0.974
ENSSTUP00000026703	pomt2	ENSSTUP00000026703	ENSSTUP00000031567	protein-O-mannosyltransferase 1.	Protein O-mannosyltransferase 2.	0.999
LOC115169761	LOC115171563	ENSSTUP00000031818	ENSSTUP00000034169	Beta-1,4-galactosyltransferase 2-like.	Beta-1,4-galactosyltransferase 1-like.	0.715
LOC115169761	LOC115177059	ENSSTUP00000031818	ENSSTUP00000087754	Beta-1,4-galactosyltransferase 2-like.	Beta-1,4-galactosyltransferase 3-like.	0.731
LOC115169761	LOC115177496	ENSSTUP00000031818	ENSSTUP00000082287	Beta-1,4-galactosyltransferase 2-like.	Beta-1,4-galactosyltransferase 3-like.	0.732
LOC115169761	LOC115205174	ENSSTUP00000031818	ENSSTUP00000065280	Beta-1,4-galactosyltransferase 2-like.	Beta-1,4-galactosyltransferase 1-like.	0.715
LOC115169761	pomgnt1	ENSSTUP00000031818	ENSSTUP00000012477	Beta-1,4-galactosyltransferase 2-like.	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).	0.958
LOC115171563	LOC115169761	ENSSTUP00000034169	ENSSTUP00000031818	Beta-1,4-galactosyltransferase 1-like.	Beta-1,4-galactosyltransferase 2-like.	0.715
LOC115171563	pomgnt1	ENSSTUP00000034169	ENSSTUP00000012477	Beta-1,4-galactosyltransferase 1-like.	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).	0.958
LOC115176675	ENSSTUP00000026703	ENSSTUP00000094312	ENSSTUP00000026703	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2.	protein-O-mannosyltransferase 1.	0.974
LOC115176675	LOC115180439	ENSSTUP00000094312	ENSSTUP00000023739	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2.	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like.	0.947
LOC115176675	pomgnt1	ENSSTUP00000094312	ENSSTUP00000012477	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2.	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).	0.974
LOC115176675	pomt2	ENSSTUP00000094312	ENSSTUP00000031567	Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2.	Protein O-mannosyltransferase 2.	0.974
LOC115177059	LOC115169761	ENSSTUP00000087754	ENSSTUP00000031818	Beta-1,4-galactosyltransferase 3-like.	Beta-1,4-galactosyltransferase 2-like.	0.731
LOC115177059	LOC115177496	ENSSTUP00000087754	ENSSTUP00000082287	Beta-1,4-galactosyltransferase 3-like.	Beta-1,4-galactosyltransferase 3-like.	0.947
LOC115177059	b4galt3	ENSSTUP00000087754	ENSSTUP00000105928	Beta-1,4-galactosyltransferase 3-like.	Beta-1,4-galactosyltransferase 3.	0.948
LOC115177059	pomgnt1	ENSSTUP00000087754	ENSSTUP00000012477	Beta-1,4-galactosyltransferase 3-like.	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).	0.958
LOC115177496	LOC115169761	ENSSTUP00000082287	ENSSTUP00000031818	Beta-1,4-galactosyltransferase 3-like.	Beta-1,4-galactosyltransferase 2-like.	0.732