STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000012480mutS homolog 4. (852 aa)    
Predicted Functional Partners:
ENSSTUP00000106451
mutS homolog 5.
  
0.999
pms1
PMS1 homolog 1, mismatch repair system component.
 
 0.991
pms2
PMS1 homolog 2, mismatch repair system component.
 
 0.989
ENSSTUP00000021126
mutL homolog 3 (E. coli).
  
 0.986
ENSSTUP00000062356
mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
  
 0.986
ENSSTUP00000075956
annotation not available
  
 0.986
fancm
FA complementation group M.
    
 
 0.958
ENSSTUP00000010958
Proliferating cell nuclear antigen.
  
 0.955
ENSSTUP00000019540
annotation not available
  
 0.955
PCNA
Proliferating cell nuclear antigen.
  
 0.955
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.