Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115159132Protein AMBP-like. (376 aa)    
Predicted Functional Partners:
LOC115170069
alpha-2-HS-glycoprotein-like.
   
  
 0.939
ENSSTUP00000018601
Coagulation factor II (thrombin).
   
 0.925
LOC115202882
Prothrombin-like.
   
 0.925
agt
Angiotensinogen.
   
 
 0.876
LOC115192977
Plasminogen-like.
   
 0.862
ENSSTUP00000043222
Plasminogen.
   
 0.862
APOH
Beta-2-glycoprotein 1-like.
   
  
 0.843
APOH-2
Beta-2-glycoprotein 1-like.
   
  
 0.843
fgb
Fibrinogen beta chain.
   
  
 0.842
LOC115158059
antithrombin-III-like.
   
 
 0.829
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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