ENSSTUP00000012523 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSTUP00000012523

Tousled-like kinase 2. (734 aa)

Predicted Functional Partners:

ENSSTUP00000038376

0.775

LOC115171558

0.771

LOC115178156

0.771

ASF1B

0.771

LOC115171558-2

0.771

LOC115165009

0.706

ENSSTUP00000008483

0.607

YTHDC2

0.607

smpd2

0.605

LOC115163422

0.598

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASF1B	ENSSTUP00000012523	ENSSTUP00000058534	ENSSTUP00000012523	Histone chaperone asf1b-B-like.	Tousled-like kinase 2.	0.771
ASF1B	ENSSTUP00000038376	ENSSTUP00000058534	ENSSTUP00000038376	Histone chaperone asf1b-B-like.	annotation not available	0.983
ASF1B	LOC115165009	ENSSTUP00000058534	ENSSTUP00000086731	Histone chaperone asf1b-B-like.	Protein HIRA.	0.983
ENSSTUP00000008483	ENSSTUP00000012523	ENSSTUP00000008483	ENSSTUP00000012523	annotation not available	Tousled-like kinase 2.	0.607
ENSSTUP00000008483	YTHDC2	ENSSTUP00000008483	ENSSTUP00000050298	annotation not available	YTH domain containing 2.	0.855
ENSSTUP00000008483	smpd2	ENSSTUP00000008483	ENSSTUP00000050715	annotation not available	Sphingomyelin phosphodiesterase 2.	0.452
ENSSTUP00000012523	ASF1B	ENSSTUP00000012523	ENSSTUP00000058534	Tousled-like kinase 2.	Histone chaperone asf1b-B-like.	0.771
ENSSTUP00000012523	ENSSTUP00000008483	ENSSTUP00000012523	ENSSTUP00000008483	Tousled-like kinase 2.	annotation not available	0.607
ENSSTUP00000012523	ENSSTUP00000038376	ENSSTUP00000012523	ENSSTUP00000038376	Tousled-like kinase 2.	annotation not available	0.775
ENSSTUP00000012523	LOC115163422	ENSSTUP00000012523	ENSSTUP00000081650	Tousled-like kinase 2.	Dynein light chain 2, cytoplasmic.	0.598
ENSSTUP00000012523	LOC115165009	ENSSTUP00000012523	ENSSTUP00000086731	Tousled-like kinase 2.	Protein HIRA.	0.706
ENSSTUP00000012523	LOC115171558	ENSSTUP00000012523	ENSSTUP00000002744	Tousled-like kinase 2.	Histone chaperone asf1b-B.	0.771
ENSSTUP00000012523	LOC115171558-2	ENSSTUP00000012523	ENSSTUP00000084845	Tousled-like kinase 2.	Histone chaperone asf1b-B.	0.771
ENSSTUP00000012523	LOC115178156	ENSSTUP00000012523	ENSSTUP00000055658	Tousled-like kinase 2.	Histone chaperone asf1b-B-like.	0.771
ENSSTUP00000012523	YTHDC2	ENSSTUP00000012523	ENSSTUP00000050298	Tousled-like kinase 2.	YTH domain containing 2.	0.607
ENSSTUP00000012523	smpd2	ENSSTUP00000012523	ENSSTUP00000050715	Tousled-like kinase 2.	Sphingomyelin phosphodiesterase 2.	0.605
ENSSTUP00000038376	ASF1B	ENSSTUP00000038376	ENSSTUP00000058534	annotation not available	Histone chaperone asf1b-B-like.	0.983
ENSSTUP00000038376	ENSSTUP00000012523	ENSSTUP00000038376	ENSSTUP00000012523	annotation not available	Tousled-like kinase 2.	0.775
ENSSTUP00000038376	LOC115165009	ENSSTUP00000038376	ENSSTUP00000086731	annotation not available	Protein HIRA.	0.999
ENSSTUP00000038376	LOC115171558	ENSSTUP00000038376	ENSSTUP00000002744	annotation not available	Histone chaperone asf1b-B.	0.983