Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115192209pre-mRNA-splicing factor 38A-like. (308 aa)    
Predicted Functional Partners:
LOC115166918
Microfibrillar-associated protein 1-like.
   
 0.982
LOC115166918-2
Microfibrillar-associated protein 1-like.
   
 0.982
ENSSTUP00000005397
Zinc finger, matrin-type 2.
   
 0.971
ik
IK cytokine.
   
 
 0.945
LOC115152709
Transcription elongation regulator 1-like protein.
   
 0.925
TCERG1
Transcription elongation regulator 1-like.
   
 0.925
ENSSTUP00000027557
annotation not available
   
 0.925
LOC115190190
Transcription elongation regulator 1-like protein.
   
 0.925
ENSSTUP00000043571
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.891
ENSSTUP00000004506
annotation not available
    
 0.861
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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