Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC115151847Carbonic anhydrase 5B, mitochondrial-like. (315 aa)    
Predicted Functional Partners:
RPF2
Ribosome production factor 2 homolog.
   
 
 0.704
LOC115194098
Ribosome production factor 2 homolog.
   
 
 0.704
ENSSTUP00000000960
Glutamate-rich WD repeat containing 1.
   
  
 0.656
ak6
Adenylate kinase 6.
   
  
 0.627
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
  
 0.625
nle1
Notchless homolog 1.
   
  
 0.596
ENSSTUP00000005044
ALK receptor tyrosine kinase.
    
 
 0.592
rrp12
Ribosomal RNA processing 12 homolog.
   
    0.591
LOC115179456
Periodic tryptophan protein 2 homolog.
   
    0.589
sdad1
SDA1 domain containing 1.
   
    0.585
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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