Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
arhgap42Rho GTPase activating protein 42. (990 aa)    
Predicted Functional Partners:
LOC115204317
Cdc42 effector protein 2-like.
    
   0.714
LOC115191797
Rho GTPase-activating protein 10-like.
    
   0.681
LOC115202230
Rho GTPase-activating protein 10-like.
    
   0.681
LOC115148888
C2 domain-containing protein 2-like.
    
   0.664
C2CD2
C2 calcium dependent domain containing 2.
    
   0.664
LOC115150657
Cell division control protein 42 homolog.
    
 0.626
ENSSTUP00000047803
annotation not available
    
 0.626
LOC115165776
Cell division control protein 42 homolog.
    
 0.626
CDC42
Cell division control protein 42 homolog.
    
 0.626
LOC115165260
Rho-related GTP-binding protein RhoA-C-like.
    
 0.594
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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