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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000012656FIP1 like 1a (S. cerevisiae). (464 aa)    
Predicted Functional Partners:
WDR33
WD repeat domain 33.
   
 0.997
cpsf3
Cleavage and polyadenylation specific factor 3.
    
 0.996
ENSSTUP00000107104
annotation not available
    
 0.996
sympk
Symplekin.
    
 0.995
ENSSTUP00000060160
Cleavage and polyadenylation specific factor 1.
   
 0.992
ENSSTUP00000111397
Cleavage and polyadenylation specific factor 1.
   
 0.992
LOC115159834
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.991
LOC115174600
Cleavage and polyadenylation specificity factor subunit 2-like.
    
 0.991
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.986
cstf3
Cleavage stimulation factor subunit 3.
   
 0.984
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.