Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000012656FIP1 like 1a (S. cerevisiae). (464 aa)    
Predicted Functional Partners:
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 0.996
WDR33
WD repeat domain 33.
   
 0.996
ENSSTUP00000107104
annotation not available
    
 0.992
LOC115159834
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.990
LOC115174600
Cleavage and polyadenylation specificity factor subunit 2-like.
    
 0.990
sympk
Symplekin.
   
 0.989
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.982
ENSSTUP00000060160
Cleavage and polyadenylation specific factor 1.
   
 0.981
ENSSTUP00000111397
Cleavage and polyadenylation specific factor 1.
   
 0.981
cstf1
Cleavage stimulation factor subunit 1.
    
 0.977
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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