STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115166753KH homology domain-containing protein 4-like. (637 aa)    
Predicted Functional Partners:
PUF60
poly(U)-binding-splicing factor PUF60-like.
    
 
 0.720
LOC115156495
poly(U)-binding-splicing factor PUF60-like.
    
 
 0.720
LOC115195746
poly(U)-binding-splicing factor PUF60-like.
    
 
 0.720
LOC115204179
stAR-related lipid transfer protein 7, mitochondrial-like.
    
   0.583
LOC115159455
stAR-related lipid transfer protein 7, mitochondrial-like.
    
   0.583
LOC115205015
Luc7-like protein 3.
   
  
 0.579
LOC115171628
Luc7-like protein 3.
   
  
 0.579
LOC115150322
U3 small nucleolar RNA-interacting protein 2-like.
      
 0.529
LOC115208109
U3 small nucleolar RNA-interacting protein 2-like.
      
 0.529
ENSSTUP00000025291
annotation not available
      
 0.512
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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