STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115162293Homeobox protein OTX2-like. (289 aa)    
Predicted Functional Partners:
LOC115154157
Zinc finger protein ZPR1-like.
      
 0.546
LOC115148663
Zinc finger protein ZPR1-like.
      
 0.546
LOC115200804
Polycystin-1-like.
      
 0.546
LOC115174798
Clusterin-like.
      
 0.538
ENSSTUP00000089707
Estrogen receptor 2b.
    
 
 0.515
ENSSTUP00000091259
Estrogen receptor 2b.
    
 
 0.515
ENSSTUP00000093868
Estrogen receptor 2b.
    
 
 0.515
ENSSTUP00000101929
Estrogen receptor 2b.
    
 
 0.515
LOC115165107
Fibroblast growth factor 5-like.
    
 
 0.489
LOC115164202
Zinc finger protein 366-like.
    
 
 0.460
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.