Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115162293Homeobox protein OTX2-like. (289 aa)    
Predicted Functional Partners:
LOC115196453
Homeobox protein GBX-2-like.
    
 0.726
LOC115179719
Homeobox protein GBX-2-like.
    
 0.726
LOC115203992
POU domain, class 5, transcription factor 1-like.
    
 0.663
LOC115159657
POU domain, class 5, transcription factor 1-like.
    
 0.663
LOC115193502
Homeobox protein OTX1 B-like.
   
  
 0.640
ENSSTUP00000052734
Orthodenticle homeobox 1.
   
  
 0.640
OTX1
Homeobox protein OTX1 B-like.
   
  
 0.640
LOC115178536
Homeobox protein OTX1 B-like.
   
  
 0.640
LOC115165107
Fibroblast growth factor 5-like.
      
 0.609
LOC115164202
Zinc finger protein 366-like.
   
 
 0.608
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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