STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTGR1Prostaglandin reductase 1-like. (329 aa)    
Predicted Functional Partners:
FH
Fumarate hydratase, mitochondrial-like.
   
  0.620
LOC115183303
Fumarate hydratase, mitochondrial-like.
   
  0.620
ENSSTUP00000007056
Zgc:113208.
   
  0.617
LOC115192027
succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial.
   
 
  0.610
LOC115202081
succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like.
   
 
  0.610
metap1d
Methionyl aminopeptidase type 1D, mitochondrial.
  
  
 0.583
ENSSTUP00000085785
Methionyl aminopeptidase type 1D (mitochondrial).
  
  
 0.583
LOC115179688
Succinate-semialdehyde dehydrogenase, mitochondrial-like.
  
 
 0.562
LOC115162950
Coatomer subunit delta-like.
   
  
 0.551
LOC115205905
Coatomer subunit delta-like.
   
  
 0.551
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.