Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115194411Negative elongation factor A-like. (544 aa)    
Predicted Functional Partners:
LOC115176010
Negative elongation factor E-like.
   
 0.993
LOC115173406
Negative elongation factor E-like.
   
 0.993
ENSSTUP00000035122
Negative elongation factor complex member C/D.
    
 0.992
ENSSTUP00000087241
Negative elongation factor complex member C/D.
    
 0.992
ENSSTUP00000050569
Negative elongation factor complex member B.
   
 0.991
LOC115164714
Negative elongation factor B-like.
   
 0.991
ENSSTUP00000012123
SPT5 homolog, DSIF elongation factor subunit.
    
 0.953
ENSSTUP00000034775
SPT5 homolog, DSIF elongation factor subunit.
    
 0.953
ENSSTUP00000038680
annotation not available
    
 0.943
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.943
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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