Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000012883annotation not available (127 aa)    
Predicted Functional Partners:
LOC115169781
Ubiquitin-like protein FUBI.
   
 0.998
ENSSTUP00000060436
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
 0.998
ENSSTUP00000077803
FAU ubiquitin like and ribosomal protein S30 fusion b.
   
 0.998
ENSSTUP00000001683
annotation not available
   
 0.996
ENSSTUP00000004077
annotation not available
   
 0.996
ENSSTUP00000064321
annotation not available
   
 0.996
LOC115183127
40S ribosomal protein S19-like.
  
 0.996
LOC115156732
40S ribosomal protein S28.
   
 0.996
LOC115177464
40S ribosomal protein S19.
  
 0.996
LOC115156735
40S ribosomal protein S15-like.
   
 0.996
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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