Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115160057Rab-like protein 6. (752 aa)    
Predicted Functional Partners:
LOC115166912
Vacuolar protein sorting-associated protein 33B.
    
 0.851
ENSSTUP00000111288
VPS33B late endosome and lysosome associated.
    
 0.851
trappc1
Trafficking protein particle complex 1.
    
 0.835
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
 0.834
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.831
USO1
General vesicular transport factor p115-like.
   
 0.797
LOC115191755
General vesicular transport factor p115-like.
   
 0.797
vps33a
VPS33A core subunit of CORVET and HOPS complexes.
    
 0.797
ENSSTUP00000110890
VPS33A core subunit of CORVET and HOPS complexes.
    
 0.797
LOC115192302
Trafficking protein particle complex subunit 8-like.
    
 0.788
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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