LOC115198476 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115198476

ATP-sensitive inward rectifier potassium channel 10-like. (433 aa)

Predicted Functional Partners:

LOC115153522

0.771

LOC115201697

0.771

LOC115207517

0.768

LOC115171841

0.767

gng10

0.713

LOC115189487

0.713

LOC115157229

0.676

GNG5

0.676

GNB5

0.664

LOC115166976

0.664

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNB5	GNG5	ENSSTUP00000004308	ENSSTUP00000083158	Guanine nucleotide-binding protein subunit beta-5a-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	0.969
GNB5	LOC115153522	ENSSTUP00000004308	ENSSTUP00000013635	Guanine nucleotide-binding protein subunit beta-5a-like.	Inward rectifier potassium channel 16-like.	0.694
GNB5	LOC115157229	ENSSTUP00000004308	ENSSTUP00000063250	Guanine nucleotide-binding protein subunit beta-5a-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5.	0.969
GNB5	LOC115171841	ENSSTUP00000004308	ENSSTUP00000101645	Guanine nucleotide-binding protein subunit beta-5a-like.	Inward rectifier potassium channel 16-like.	0.694
GNB5	LOC115189487	ENSSTUP00000004308	ENSSTUP00000103157	Guanine nucleotide-binding protein subunit beta-5a-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13-like.	0.930
GNB5	LOC115198476	ENSSTUP00000004308	ENSSTUP00000012929	Guanine nucleotide-binding protein subunit beta-5a-like.	ATP-sensitive inward rectifier potassium channel 10-like.	0.664
GNB5	LOC115201697	ENSSTUP00000004308	ENSSTUP00000057980	Guanine nucleotide-binding protein subunit beta-5a-like.	Inward rectifier potassium channel 16-like.	0.694
GNB5	LOC115207517	ENSSTUP00000004308	ENSSTUP00000001699	Guanine nucleotide-binding protein subunit beta-5a-like.	Inward rectifier potassium channel 16-like.	0.694
GNB5	gng10	ENSSTUP00000004308	ENSSTUP00000036966	Guanine nucleotide-binding protein subunit beta-5a-like.	G protein subunit gamma 10.	0.954
GNG5	GNB5	ENSSTUP00000083158	ENSSTUP00000004308	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	Guanine nucleotide-binding protein subunit beta-5a-like.	0.969
GNG5	LOC115153522	ENSSTUP00000083158	ENSSTUP00000013635	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	Inward rectifier potassium channel 16-like.	0.710
GNG5	LOC115166976	ENSSTUP00000083158	ENSSTUP00000026795	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	Guanine nucleotide-binding protein subunit beta-5b.	0.969
GNG5	LOC115171841	ENSSTUP00000083158	ENSSTUP00000101645	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	Inward rectifier potassium channel 16-like.	0.710
GNG5	LOC115189487	ENSSTUP00000083158	ENSSTUP00000103157	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13-like.	0.868
GNG5	LOC115198476	ENSSTUP00000083158	ENSSTUP00000012929	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	ATP-sensitive inward rectifier potassium channel 10-like.	0.676
GNG5	LOC115201697	ENSSTUP00000083158	ENSSTUP00000057980	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	Inward rectifier potassium channel 16-like.	0.710
GNG5	LOC115207517	ENSSTUP00000083158	ENSSTUP00000001699	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	Inward rectifier potassium channel 16-like.	0.710
GNG5	gng10	ENSSTUP00000083158	ENSSTUP00000036966	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	G protein subunit gamma 10.	0.866
LOC115153522	GNB5	ENSSTUP00000013635	ENSSTUP00000004308	Inward rectifier potassium channel 16-like.	Guanine nucleotide-binding protein subunit beta-5a-like.	0.694
LOC115153522	GNG5	ENSSTUP00000013635	ENSSTUP00000083158	Inward rectifier potassium channel 16-like.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5-like.	0.710