Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115151661Interferon-induced protein 44-like. (390 aa)    
Predicted Functional Partners:
UQCRFS1
Cytochrome b-c1 complex subunit Rieske, mitochondrial-like.
    
 0.789
UQCRFS1-2
Cytochrome b-c1 complex subunit Rieske, mitochondrial-like.
    
 0.789
ENSSTUP00000114351
Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.
    
 0.789
LOC115197191
39S ribosomal protein L23, mitochondrial.
   
 
 0.715
mrpl3
Mitochondrial ribosomal protein L3.
   
 
 0.710
LOC115148829
39S ribosomal protein L22, mitochondrial-like.
   
 
 0.704
mrpl43
Mitochondrial ribosomal protein L43.
   
   0.696
mrps25
Mitochondrial ribosomal protein S25.
   
   0.696
LOC115169859
UBX domain-containing protein 7-like.
    
   0.692
LOC115156844
UBX domain-containing protein 7-like.
    
   0.692
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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