Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115198481SLAM family member 5-like. (382 aa)    
Predicted Functional Partners:
pold2
DNA polymerase delta 2, accessory subunit.
    
 0.756
fancm
FA complementation group M.
    
 0.750
ENSSTUP00000100857
annotation not available
    
 0.695
ddx20
DEAD-box helicase 20.
   
 0.691
LOC115152231
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial-like.
    
  0.686
LOC115207651
DNA polymerase delta catalytic subunit-like.
    
 0.645
LOC115171850
DNA polymerase delta catalytic subunit-like.
    
 0.645
DNA2
DNA replication helicase/nuclease 2.
    
 0.635
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
    
  0.611
NDUFA13-2
NADH:ubiquinone oxidoreductase subunit A13.
    
  0.611
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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