STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsen54tRNA splicing endonuclease subunit 54. (522 aa)    
Predicted Functional Partners:
tsen2
tRNA splicing endonuclease subunit 2.
    
 0.994
ENSSTUP00000079068
annotation not available
    
 0.965
tsen15
tRNA splicing endonuclease subunit 15.
    
 0.965
tsen34
tRNA splicing endonuclease subunit 34.
   
 0.932
LOC115171830
Polyribonucleotide 5'-hydroxyl-kinase Clp1-like.
    
 0.905
LOC115205193
Polyribonucleotide 5'-hydroxyl-kinase Clp1.
    
 0.905
trmt2b
tRNA methyltransferase 2 homolog B.
   
  
 0.822
ENSSTUP00000113902
tRNA methyltransferase 2 homolog A.
   
  
 0.822
LOC115204243
Probable G-protein coupled receptor 34.
   
    0.782
ENSSTUP00000051224
annotation not available
   
    0.782
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.