STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000022385annotation not available (2441 aa)    
Predicted Functional Partners:
PRPF6
pre-mRNA processing factor 6.
    
 
 0.899
prpf6
pre-mRNA processing factor 6.
    
 
 0.899
LOC115197538
116 kDa U5 small nuclear ribonucleoprotein component-like.
    
 
 0.879
LOC115171073
116 kDa U5 small nuclear ribonucleoprotein component.
    
 
 0.879
LOC115162122
Pinin-like.
   
 0.869
LOC115172394
Pinin-like.
   
 0.869
ENSSTUP00000051930
pre-mRNA processing factor 8.
    
 
 0.867
ENSSTUP00000105749
pre-mRNA processing factor 8.
    
 
 0.867
LOC115160908
Splicing factor 3B subunit 1.
   
 
 0.864
LOC115155584
Splicing factor 3B subunit 1-like.
   
 
 0.864
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.