STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000029845Ankyrin repeat domain 55. (667 aa)    
Predicted Functional Partners:
ift52
Intraflagellar transport 52.
    
 0.943
ENSSTUP00000028455
Intraflagellar transport 46 homolog (Chlamydomonas).
    
 0.941
ift74
Intraflagellar transport 74.
    
 
 0.910
LOC115147254
Tetratricopeptide repeat protein 30A-like.
    
 0.817
LOC115181497
Tetratricopeptide repeat protein 30A.
    
 0.817
wdr90
WD repeat domain 90.
    
 0.815
ift88
Intraflagellar transport 88.
   
 0.715
ENSSTUP00000018703
annotation not available
    
 0.705
LOC115164670
Intraflagellar transport protein 81 homolog.
    
 0.705
ENSSTUP00000013955
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.666
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.