STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000032148Syntaxin binding protein 5a (tomosyn). (1141 aa)    
Predicted Functional Partners:
LOC115169297
Protein kinase C iota type.
    
 0.877
ENSSTUP00000043647
annotation not available
    
 0.877
prkcz
Protein kinase C zeta.
    
 0.877
ENSSTUP00000091540
Protein kinase C, iota.
    
 0.877
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
    
 0.814
LOC115167648
Synaptosomal-associated protein 25-A-like.
   
 
 0.776
ENSSTUP00000052220
annotation not available
   
 
 0.776
LOC115174530
Synaptosomal-associated protein 25-A.
   
 
 0.776
LOC115171039
syntaxin-1B.
    
 0.729
LOC115148797
syntaxin-1A.
    
 0.729
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.