STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115166797Transducin-like enhancer protein 3-B. (779 aa)    
Predicted Functional Partners:
LOC115154022
Transcription factor 7-like 2.
    
 0.923
HDAC2
Histone deacetylase 2.
    
 0.889
LEF1
Lymphoid enhancer binding factor 1.
    
 0.873
LOC115201081
Transcription factor 7-like 2.
    
 0.873
LOC115158068
Transcription factor 7-like 2.
    
 0.873
ENSSTUP00000080266
annotation not available
    
 0.873
ENSSTUP00000064903
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.858
LOC115203917
Transcription factor 7-like 1-B.
    
 0.829
ENSSTUP00000083742
Transcription factor 7 like 1a.
    
 0.829
LOC115159747
Transcription factor 7-like 1-B.
    
 0.829
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.