STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRH2peptidyl-tRNA hydrolase 2. (96 aa)    
Predicted Functional Partners:
LOC115191808
glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial-like.
    
  0.821
LOC115202221
glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial-like.
    
  0.821
usp30
Ubiquitin specific peptidase 30.
    
  0.788
LOC115205378
L-asparaginase-like.
    
  0.698
LOC115202169
Transmembrane protein 109-like.
    
  0.698
LOC115154075
L-asparaginase-like.
    
  0.698
LOC115191858
L-asparaginase-like.
    
  0.698
LOC115191861
Transmembrane protein 109-like.
    
  0.698
ENSSTUP00000070939
annotation not available
     
 0.635
tomm70
Translocase of outer mitochondrial membrane 70.
     
 0.635
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.