STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000048582AT hook, DNA binding motif, containing 1. (1419 aa)    
Predicted Functional Partners:
LOC115159995
Protein SCAI-like.
    
 
 0.597
SCAI
Suppressor of cancer cell invasion.
    
 
 0.597
pold2
DNA polymerase delta 2, accessory subunit.
      
 0.545
SCPEP1
Serine carboxypeptidase 1.
      
 0.538
ENSSTUP00000066224
Serine carboxypeptidase 1.
      
 0.538
HUWE1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
      
 0.499
dhx35
DEAH-box helicase 35.
      
 0.499
ENSSTUP00000091137
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
      
 0.499
LOC115174149
Uncharacterized protein KIAA1522 homolog.
      
 0.497
ccdc28a
Coiled-coil domain containing 28A.
      
 0.479
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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