STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000062806AT rich interactive domain 1B (SWI1-like). (2383 aa)    
Predicted Functional Partners:
smarcd2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.
    
 0.953
LOC115159988
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A.
    
 0.938
ENSSTUP00000052486
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b.
    
 0.938
ENSSTUP00000106970
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b.
    
 0.938
LOC115151526
Actin-like protein 6A.
    
 0.933
ENSSTUP00000063476
Actin-like 6A.
    
 0.933
SMARCE1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
    
 0.911
SMARCE1-2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
    
 0.911
LOC115199702
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like.
    
 0.911
SMARCE1-3
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like.
    
 0.911
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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