STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115200199Rhomboid domain-containing protein 3-like. (362 aa)    
Predicted Functional Partners:
piga
Phosphatidylinositol glycan anchor biosynthesis class A.
   
 
  0.685
LOC115156316
Phosphatidylinositol N-acetylglucosaminyltransferase subunit A-like.
   
 
  0.685
pigw
Phosphatidylinositol glycan anchor biosynthesis class W.
   
 
  0.685
LOC115203811
Transitional endoplasmic reticulum ATPase-like.
    
 
 0.669
LOC115203347
Spermatogenesis-associated protein 5-like protein 1.
    
 
 0.669
LOC115166965
Spermatogenesis-associated protein 5-like protein 1.
    
 
 0.669
SPATA5
Spermatogenesis associated 5.
    
 
 0.669
LOC115177879
Transitional endoplasmic reticulum ATPase-like.
    
 
 0.669
LOC115200242
Transitional endoplasmic reticulum ATPase.
    
 
 0.669
LOC115159870
Transitional endoplasmic reticulum ATPase-like.
    
 
 0.669
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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