STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nkx1-1NK1 homeobox 1. (387 aa)    
Predicted Functional Partners:
LEF1
Lymphoid enhancer binding factor 1.
     
 0.528
ENSSTUP00000080266
annotation not available
     
 0.528
fancm
FA complementation group M.
     
 0.430
LOC115159223
LIM/homeobox protein Lhx5.
   
 
 0.413
LOC115149329
LIM/homeobox protein Lhx5-like.
   
 
 0.413
LOC115192596
Amino-terminal enhancer of split-like.
    
 
 0.406
ENSSTUP00000009653
TLE family member 2, transcriptional corepressor b.
    
 
 0.406
ENSSTUP00000009768
TLE family member 2, transcriptional corepressor a.
    
 
 0.406
ENSSTUP00000030272
annotation not available
    
 
 0.406
ENSSTUP00000030307
annotation not available
    
 
 0.406
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.