STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000071674annotation not available (271 aa)    
Predicted Functional Partners:
slf1
SMC5-SMC6 complex localization factor 1.
   
 0.677
ENSSTUP00000070137
AT rich interactive domain 4A (RBP1-like).
    
 0.667
arid4b
AT-rich interaction domain 4B.
    
 0.667
ENSSTUP00000077450
annotation not available
    
 0.667
arid4a
AT-rich interaction domain 4A.
    
 0.667
LOC115198276
RING finger protein 227-like.
   
  0.662
LOC115158477
Histone H2A deubiquitinase MYSM1-like.
    
 0.653
LOC115192420
Histone H2A deubiquitinase MYSM1-like.
    
 0.653
wdr90
WD repeat domain 90.
    
 0.631
LOC115208510
Inactive tyrosine-protein kinase 7-like.
    
  0.622
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.