LOC115198603 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115198603

G-protein coupled receptor 12-like. (356 aa)

Predicted Functional Partners:

haus3

0.569

haus1

0.554

DUSP10

0.546

LOC115175002

0.546

haus8

0.538

ENSSTUP00000052771

0.533

ENSSTUP00000110380

0.533

LOC115162524

0.531

LOC115172816

0.531

ENSSTUP00000082961

0.520

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUSP10	LOC115198603	ENSSTUP00000005229	ENSSTUP00000080051	Dual specificity phosphatase 10.	G-protein coupled receptor 12-like.	0.546
ENSSTUP00000052771	LOC115198603	ENSSTUP00000052771	ENSSTUP00000080051	annotation not available	G-protein coupled receptor 12-like.	0.533
ENSSTUP00000082961	LOC115198603	ENSSTUP00000082961	ENSSTUP00000080051	annotation not available	G-protein coupled receptor 12-like.	0.520
ENSSTUP00000110380	LOC115198603	ENSSTUP00000110380	ENSSTUP00000080051	Neurotensin.	G-protein coupled receptor 12-like.	0.533
LOC115162524	LOC115198603	ENSSTUP00000057150	ENSSTUP00000080051	Prepronociceptin-like.	G-protein coupled receptor 12-like.	0.531
LOC115172816	LOC115198603	ENSSTUP00000112722	ENSSTUP00000080051	proenkephalin-A-like.	G-protein coupled receptor 12-like.	0.531
LOC115175002	LOC115198603	ENSSTUP00000095778	ENSSTUP00000080051	Dual specificity protein phosphatase 10-like.	G-protein coupled receptor 12-like.	0.546
LOC115198603	DUSP10	ENSSTUP00000080051	ENSSTUP00000005229	G-protein coupled receptor 12-like.	Dual specificity phosphatase 10.	0.546
LOC115198603	ENSSTUP00000052771	ENSSTUP00000080051	ENSSTUP00000052771	G-protein coupled receptor 12-like.	annotation not available	0.533
LOC115198603	ENSSTUP00000082961	ENSSTUP00000080051	ENSSTUP00000082961	G-protein coupled receptor 12-like.	annotation not available	0.520
LOC115198603	ENSSTUP00000110380	ENSSTUP00000080051	ENSSTUP00000110380	G-protein coupled receptor 12-like.	Neurotensin.	0.533
LOC115198603	LOC115162524	ENSSTUP00000080051	ENSSTUP00000057150	G-protein coupled receptor 12-like.	Prepronociceptin-like.	0.531
LOC115198603	LOC115172816	ENSSTUP00000080051	ENSSTUP00000112722	G-protein coupled receptor 12-like.	proenkephalin-A-like.	0.531
LOC115198603	LOC115175002	ENSSTUP00000080051	ENSSTUP00000095778	G-protein coupled receptor 12-like.	Dual specificity protein phosphatase 10-like.	0.546
LOC115198603	haus1	ENSSTUP00000080051	ENSSTUP00000093694	G-protein coupled receptor 12-like.	HAUS augmin like complex subunit 1.	0.554
LOC115198603	haus3	ENSSTUP00000080051	ENSSTUP00000059719	G-protein coupled receptor 12-like.	HAUS augmin like complex subunit 3.	0.569
LOC115198603	haus8	ENSSTUP00000080051	ENSSTUP00000010513	G-protein coupled receptor 12-like.	HAUS augmin like complex subunit 8.	0.538
haus1	LOC115198603	ENSSTUP00000093694	ENSSTUP00000080051	HAUS augmin like complex subunit 1.	G-protein coupled receptor 12-like.	0.554
haus1	haus3	ENSSTUP00000093694	ENSSTUP00000059719	HAUS augmin like complex subunit 1.	HAUS augmin like complex subunit 3.	0.999
haus1	haus8	ENSSTUP00000093694	ENSSTUP00000010513	HAUS augmin like complex subunit 1.	HAUS augmin like complex subunit 8.	0.999