STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VWA5B1-2Von Willebrand factor A domain-containing protein 5B1-like. (1341 aa)    
Predicted Functional Partners:
RPF2
Ribosome production factor 2 homolog.
   
 
 0.724
LOC115194098
Ribosome production factor 2 homolog.
   
 
 0.724
ENSSTUP00000000960
Glutamate-rich WD repeat containing 1.
   
  
 0.654
LOC115173455
60S ribosomal protein L11.
    
 
 0.644
LOC115173455-2
60S ribosomal protein L11.
    
 
 0.644
ENSSTUP00000014347
Ribosome biogenesis regulator 1 homolog.
   
 
 0.643
ENSSTUP00000027384
Ribosome biogenesis regulator 1 homolog.
   
 
 0.643
RPL5
60S ribosomal protein L5-like.
    
 
 0.634
RPL5-2
60S ribosomal protein L5.
    
 
 0.634
RPL5-3
60S ribosomal protein L5-like.
    
 
 0.634
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.