STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000082555HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1b. (1516 aa)    
Predicted Functional Partners:
LOC115153309
ubiquitin-40S ribosomal protein S27a-like.
    
 0.889
rps27a
Ribosomal protein S27a.
    
 0.889
LOC115154315
polyubiquitin-C.
    
 0.881
ENSSTUP00000031566
annotation not available
    
 0.881
ENSSTUP00000105071
annotation not available
    
 0.878
ENSSTUP00000013151
annotation not available
    
 0.838
LOC115156752
ubiquitin-60S ribosomal protein L40-like.
    
 0.838
ENSSTUP00000101776
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.838
LOC115156752-2
ubiquitin-60S ribosomal protein L40-like.
    
 0.838
LOC115177450
26S proteasome non-ATPase regulatory subunit 4-like.
    
 0.810
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.