STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115171321Sterol regulatory element-binding protein 2-like. (1163 aa)    
Predicted Functional Partners:
SCAP
Sterol regulatory element-binding protein cleavage-activating protein-like.
   
 0.980
LOC115176731
Sterol regulatory element-binding protein cleavage-activating protein-like.
   
 0.980
NPC1L1
NPC1 like intracellular cholesterol transporter 1.
   
 0.955
LOC115157223
NPC intracellular cholesterol transporter 1-like.
   
 0.954
LOC115169556
NPC intracellular cholesterol transporter 1-like.
   
 0.954
LOC115197212
Importin subunit beta-1.
    
 0.924
LOC115171046
Importin subunit beta-1-like.
    
 0.924
ENSSTUP00000061030
Membrane-bound transcription factor peptidase, site 2.
    
 0.899
LOC115205438
Peroxisome proliferator-activated receptor gamma coactivator 1-beta-like.
    
 0.871
LOC115174749
Peroxisome proliferator-activated receptor gamma coactivator 1-beta-like.
    
 0.871
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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