STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115168112Calcium-independent phospholipase A2-gamma-like. (952 aa)    
Predicted Functional Partners:
LOC115193914
Peripherin-2-like.
      
 0.816
LOC115164743
Natterin-3-like.
      
 0.816
LOC115154555
E3 ubiquitin-protein ligase RNF128-like.
      
 0.816
LOC115156657
Peripherin-2-like.
      
 0.816
LOC115153972
POU domain, class 4, transcription factor 3-like.
      
 0.816
LOC115199896
Natterin-3-like.
      
 0.816
LOC115153090
Peripherin-2-like.
      
 0.816
LOC115154696
Peripherin-2-like.
      
 0.816
LOC115200851
Peripherin-2-like.
      
 0.816
LOC115194159
Serine/threonine-protein phosphatase PP1-beta catalytic subunit.
   
 
 0.807
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.