STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c21h5orf22Chromosome 21 C5orf22 homolog. (467 aa)    
Predicted Functional Partners:
LOC115197309
Four-jointed box protein 1-like.
   
 0.798
FJX1
Four-jointed box protein 1-like.
   
 0.798
calhm2
Calcium homeostasis modulator family member 2.
   
    0.782
rubcnl
Rubicon like autophagy enhancer.
   
   0.777
LOC115175772
LIX1-like protein.
   
 0.765
LIX1L
LIX1-like protein.
   
 0.765
ENSSTUP00000114714
Limb and CNS expressed 1.
   
 0.765
rere
Arginine-glutamic acid dipeptide repeats.
    
 0.644
ENSSTUP00000019894
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.644
ENSSTUP00000028194
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.644
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.