STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl3350S ribosomal protein L33, chloroplastic. (66 aa)    
Predicted Functional Partners:
BC332_15923
30S ribosomal protein S16, chloroplastic.
   
 
 0.882
rps8
30S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.
   
 
 0.874
rpl14
50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA.
   
 
 0.863
BC332_18356
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.863
BC332_05155
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.843
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
 
 0.838
BC332_20038
50S ribosomal protein L24, chloroplastic; Belongs to the universal ribosomal protein uL24 family.
    
 
 0.831
BC332_00651
50S ribosomal protein L19-1, chloroplastic.
    
 
 0.815
BC332_09491
30S ribosomal protein S17, chloroplastic; Belongs to the universal ribosomal protein uS17 family.
    
 
 0.809
BC332_26693
50S ribosomal protein 5, chloroplastic.
    
   0.806
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.