STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_34248Pectinesterase. (89 aa)    
Predicted Functional Partners:
BC332_12696
Pectate lyase.
  
 
 0.782
BC332_23208
Pectate lyase.
  
 
  0.721
BC332_28187
Pectate lyase.
   
 
  0.701
BC332_17518
Pectate lyase.
   
 
 0.658
BC332_08905
Uncharacterized protein.
     
 0.655
BC332_03852
Pectate lyase.
   
 
  0.652
BC332_05108
Pectate lyase.
   
 
  0.589
BC332_07618
Pectate lyase.
  
 
  0.571
BC332_22952
Pectate lyase.
   
 
  0.568
BC332_06054
Pectate lyase.
  
 
  0.568
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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