STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_33529DDRGK domain-containing protein 1. (299 aa)    
Predicted Functional Partners:
BC332_28548
E3 UFM1-protein ligase 1-like protein.
    
 
 0.952
BC332_29747
CDK5RAP3-like protein.
    
 
 0.931
BC332_07380
CDK5RAP3-like protein.
    
 
 0.931
BC332_11722
Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.
  
 
 
 0.884
BC332_31209
Ubiquitin-fold modifier 1; Ubiquitin-like modifier.
    
 
 0.633
BC332_01007
Ubiquitin-fold modifier 1; Ubiquitin-like modifier.
    
 
 0.633
BC332_24756
SRP54 domain-containing protein.
    
 
 0.628
BC332_18079
SRP54 domain-containing protein.
    
 
 0.628
BC332_17771
Ubiquitin-like modifier-activating enzyme 5.
      
 0.615
BC332_17255
7-dehydrocholesterol reductase.
    
  0.569
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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