STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_29439Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (649 aa)    
Predicted Functional Partners:
BC332_09818
HTH TFE/IIEalpha-type domain-containing protein.
  
 
 0.991
BC332_30967
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
 0.987
BC332_17278
DNA-directed RNA polymerase II subunit 4.
    
 0.986
BC332_17325
Transcription initiation factor IIA subunit 1.
    
 0.985
BC332_02363
General transcription factor IIH subunit.
    
 0.983
BC332_18676
TFIIF_beta_N domain-containing protein.
   
 0.982
BC332_11173
TFIIF_beta domain-containing protein.
   
 0.982
BC332_09817
Transcription initiation factor TFIID subunit 2.
    
 0.981
BC332_31842
TATA-box-binding protein.
    
 0.979
BC332_01932
TATA-box-binding protein.
    
 0.979
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.