STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_29468ADP-ribosylation factor-like protein 8B; Belongs to the small GTPase superfamily. Arf family. (184 aa)    
Predicted Functional Partners:
BC332_31732
Uncharacterized protein.
    
 0.895
BC332_21669
E3 ubiquitin-protein ligase KEG.
    
 0.895
BC332_03955
Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.789
BC332_30171
Phosphatidylinositol 4-kinase beta 1; Belongs to the PI3/PI4-kinase family.
    
 0.737
BC332_34769
Uncharacterized protein.
    
 0.650
BC332_28900
Biogenesis of lysosome-related organelles complex 1 subunit 1.
    
 0.646
BC332_22457
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
 0.646
BC332_13866
Ras-related protein RABH1b.
   
0.632
BC332_03062
Ras-related protein RABH1b.
   
 0.632
BC332_15061
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
0.604
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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