STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BC332_28698Serine--tRNA ligase, cytoplasmic. (219 aa)    
Predicted Functional Partners:
BC332_13967
Putative methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.667
BC332_12829
Glycine--tRNA ligase.
   
  
 0.613
BC332_09104
Glycine--tRNA ligase.
   
  
 0.613
BC332_17424
SAGA-associated factor 11.
    
 
 0.527
BC332_12708
Transcription initiation factor TFIID subunit 9.
    
 
 0.526
BC332_05288
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
   0.521
BC332_01116
Tryptophan--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.521
BC332_31119
Tryptophan--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.518
BC332_29436
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.517
BC332_15691
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.517
Your Current Organism:
Capsicum chinense
NCBI taxonomy Id: 80379
Other names: C. chinense, Capsicum chinense Jacq., Scotch bonnet, bonnet pepper, habanero, piri piri, rocotillo
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